ABSTRACT The article focuses on the impact of the new re-bordering, caused by the COVID-19 pandemic, on the functional, ideational and institutional dimension of cross-border integration, as perceived by the Czech cross-border commuters employed on the German side of the Euroregion Elbe Labe. The interviews with forty cross-commuters showed that they were left alone in these times of re-bordering and became victims of non-coordination between Czechia and Germany. Yet, cross-border commuting seems to have survived the first pandemic waves and the German labour market will continue to attract the Czech workforce despite that fact the pandemic has introduced a major uncertainty associated with the border crossing. The pandemic has revealed the need for a functional system of the cross-border management in the period of crisis to protect cross-border commuters and provide them with better security.