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Maxime Chamberland
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Journal Articles
Publisher: Journals Gateway
Imaging Neuroscience (2025) 3: imag_a_00501.
Published: 06 March 2025
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View articletitled, Implicit neural representation of multi-shell constrained spherical deconvolution for continuous modeling of diffusion MRI
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for article titled, Implicit neural representation of multi-shell constrained spherical deconvolution for continuous modeling of diffusion MRI
Diffusion magnetic resonance imaging (dMRI) provides insight into the micro and macro-structure of the brain. Multi-shell multi-tissue constrained spherical deconvolution (MSMT-CSD) models the underlying local fiber orientation distributions (FODs) using the dMRI signal. While generally producing high-quality FODs, MSMT-CSD is a voxel-wise method that can be impacted by noise and produce erroneous FODs. Local models also do not use the spatial correlation between neighboring voxels to increase parameter estimating power. Additionally, voxel-wise methods require interpolation at arbitrary locations outside of voxel centers. These interpolations can be computationally costly or inaccurate, depending on the method of choice. Expanding upon previous work, we apply the implicit neural representation (INR) methodology to the MSMT-CSD model. This results in an unsupervised machine-learning framework that generates a continuous representation of a given dMRI dataset. The input of the INR consists of coordinates in the volume, which produce the spherical harmonics coefficients parameterizing an FOD at any desired location. A key characteristic of our model is its ability to leverage spatial correlations in the volume, which acts as a form of regularization. We evaluate the output FODs quantitatively and qualitatively in synthetic and real dMRI datasets and compare them to existing methods.
Journal Articles
Publisher: Journals Gateway
Imaging Neuroscience (2024) 2: 1–2.
Published: 20 May 2024
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View articletitled, Correction to: White matter tract microstructure, macrostructure, and associated cortical gray matter morphology across the lifespan
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for article titled, Correction to: White matter tract microstructure, macrostructure, and associated cortical gray matter morphology across the lifespan
Journal Articles
Publisher: Journals Gateway
Imaging Neuroscience (2023) 1: 1–24.
Published: 18 December 2023
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View articletitled, White matter tract microstructure, macrostructure, and associated cortical gray matter morphology across the lifespan
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for article titled, White matter tract microstructure, macrostructure, and associated cortical gray matter morphology across the lifespan
Characterizing how, when, and where the human brain changes across the lifespan is fundamental to our understanding of developmental processes of childhood and adolescence, degenerative processes of aging, and divergence from normal patterns in disease and disorders. We aimed to provide detailed descriptions of white matter pathways across the lifespan by thoroughly characterizing white matter microstructure , white matter macrostructure , and morphology of the cortex associated with white matter pathways. We analyzed four large, high-quality, cross-sectional datasets comprising 2789 total imaging sessions, and participants ranging from 0 to 100 years old, using advanced tractography and diffusion modeling. We first find that all microstructural, macrostructural, and cortical features of white matter bundles show unique lifespan trajectories, with rates and timing of development and degradation that vary across pathways—describing differences between types of pathways and locations in the brain, and developmental milestones of maturation of each feature. Second, we show cross-sectional relationships between different features that may help elucidate biological differences at different stages of the lifespan. Third, we show unique trajectories of age associations across features. Finally, we find that age associations during development are strongly related to those during aging. Overall, this study reports normative data for several features of white matter pathways of the human brain that are expected to be useful for studying normal and abnormal white matter development and degeneration.
Includes: Supplementary data