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ECAL 2011: The 11th European Conference on Artificial Life

August 8–12, 2011

Paris, France

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ECAL 2011: The 11th European Conference on Artificial Life

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Invited Contributions
Refereed Articles

ECAL 2011: The 11th European Conference on Artificial Life

Invited Contributions

General architecture of a genetic regulatory network. Applications to embryologic control (full article)

Jacques Demongeot, Alexandra Henrion-Caude, Athanase Lontos, Emmanuel Promayon

isal 2011; 1https://doi.org/10.7551/978-0-262-29714-1-ch001

View Articletitled, General architecture of a genetic regulatory network. Applications to embryologic control (full article)

Can we Computerize an Elephant? (abstract)

David Harel

isal 2011; 2https://doi.org/10.7551/978-0-262-29714-1-ch002

View Articletitled, Can we Computerize an Elephant? (abstract)

Do we need a theory in the Era of Massive Data Flow? (abstract)

Takashi Ikegami

isal 2011; 3https://doi.org/10.7551/978-0-262-29714-1-ch003

View Articletitled, Do we need a theory in the Era of Massive Data Flow? (abstract)

Answering Descartes: Beyond Turing (full article)

Stuart Kauffman

isal 2011; 4https://doi.org/10.7551/978-0-262-29714-1-ch004

View Articletitled, Answering Descartes: Beyond Turing (full article)

On the Growth of Brain Tumours: enhancing imaging techniques, highlighting limitations of current imaging, quantifying therapy efficacy and estimating patient life expectancy (full article)

James D.Murray

isal 2011; 5https://doi.org/10.7551/978-0-262-29714-1-ch005

View Articletitled, On the Growth of Brain Tumours: enhancing imaging techniques, highlighting limitations of current imaging, quantifying therapy efficacy and estimating patient life expectancy (full article)

Prospects for Machine Embryogenesis (abstract)

Jordan Pollack

isal 2011; 6https://doi.org/10.7551/978-0-262-29714-1-ch006

View Articletitled, Prospects for Machine Embryogenesis (abstract)

A review of one approach to bottom up assembly of minimal life (abstract)

Steen Rasmussen, Pierre-Alain Monnard, Martin Hanczyc, Anders Albertsen, James Boncella, Eva Bonzli, Filippo Caschera, Mark Dorr, Harold Fellermann, Maik Hadorn, Wendie Jørgensen, Philipp Loffler, Sarah Maurer, Kent Nielsen, Pernille Pedersen, Carsten Svaneborg, Michael Wamberg, Rafal Wieczorek, Hans Ziock

isal 2011; 7https://doi.org/10.7551/978-0-262-29714-1-ch007

View Articletitled, A review of one approach to bottom up assembly of minimal life (abstract)

Synthetic biocomputation: the possible and the actual (full article)

Ricard V. Solé, Javier Macia

isal 2011; 8https://doi.org/10.7551/978-0-262-29714-1-ch008

View Articletitled, Synthetic biocomputation: the possible and the actual (full article)

ALife: a tension between biology and software engineering (abstract)

Susan Stepney

isal 2011; 9https://doi.org/10.7551/978-0-262-29714-1-ch009

View Articletitled, ALife: a tension between biology and software engineering (abstract)

The mechanics of shape change in the Drosophila embryo (abstract)

Eric F. Wieschaus, Adam C. Martin, Bing He, Matthias Kaschube, Oleg Polyakov

isal 2011; 10https://doi.org/10.7551/978-0-262-29714-1-ch010

View Articletitled, The mechanics of shape change in the Drosophila embryo (abstract)

Refereed Articles

Effective calibration of artificial gene regulatory networks (full article)

Davide Agostini, Jole Costanza, Vincenzo Cutello, Luca Zammataro, Natalio Krasnogor, Mario Pavone, Giuseppe Nicosia

isal 2011; 11https://doi.org/10.7551/978-0-262-29714-1-ch011

View Articletitled, Effective calibration of artificial gene regulatory networks (full article)

The origins of communication revisited (full article)

Jordi Arranz, Jason Noble, Eric Silverman

isal 2011; 12https://doi.org/10.7551/978-0-262-29714-1-ch012

View Articletitled, The origins of communication revisited (full article)

Detecting emergent processes in cellular automata with excess information (full article)

David Balduzzi

isal 2011; 13https://doi.org/10.7551/978-0-262-29714-1-ch013

View Articletitled, Detecting emergent processes in cellular automata with excess information (full article)

Walking, hopping and jumping: a model of transcription factor dynamics on DNA (full article)

David J. Barnes, Dominique Chu

isal 2011; 14https://doi.org/10.7551/978-0-262-29714-1-ch014

View Articletitled, Walking, hopping and jumping: a model of transcription factor dynamics on DNA (full article)

Coming phase to phase with surfactants (full article)

Stuart Bartlett, Seth Bullock

isal 2011; 15https://doi.org/10.7551/978-0-262-29714-1-ch015

View Articletitled, Coming phase to phase with surfactants (full article)

Evidence in the patent record for the evolution of technology using citation and PageRank statistics (full article)

Mark A. Bedau, Andrew J. Buchanan, Devin W. Chalmers, C. Cooper Francis, Norman H. Packard, Noah M. Pepper

isal 2011; 16https://doi.org/10.7551/978-0-262-29714-1-ch016

View Articletitled, Evidence in the patent record for the evolution of technology using citation and PageRank statistics (full article)

Theory and practice of optimal mutation rate control in hamming spaces of DNA sequences (full article)

Roman V. Belavkin, Alastair Channon, Elizabeth Aston, John Aston, Christopher G. Knight

isal 2011; 17https://doi.org/10.7551/978-0-262-29714-1-ch017

View Articletitled, Theory and practice of optimal mutation rate control in hamming spaces of DNA sequences (full article)

Staging the self- assembly process using morphological information (full article)

Navneet Bhalla, Peter J. Bentley, Peter D. Vize, Christian Jacob

isal 2011; 18https://doi.org/10.7551/978-0-262-29714-1-ch018

View Articletitled, Staging the self- assembly process using morphological information (full article)

Discovering and maintaining behaviours inaccessible to incremental genetic evolution through transcription errors and cultural transmission (full article)

James M. Borg, Alastair Channon, Charles Day

isal 2011; 19https://doi.org/10.7551/978-0-262-29714-1-ch019

View Articletitled, Discovering and maintaining behaviours inaccessible to incremental genetic evolution through transcription errors and cultural transmission (full article)

Modeling and simulating crowdsourcing as a complex biological system: human crowds manifesting collective intelligence on the internet (full article)

Thierry Buecheler, Rocky Lonigro, Rudolf M. Füchslin, Rolf Pfeifer

isal 2011; 20https://doi.org/10.7551/978-0-262-29714-1-ch020

View Articletitled, Modeling and simulating crowdsourcing as a complex biological system: human crowds manifesting collective intelligence on the internet (full article)

Critical mutation rate has an exponential dependence on population size (full article)

Alastair Channon, Elizabeth Aston, Charles Day, Roman V. Belavkin, Christopher G. Knight

isal 2011; 21https://doi.org/10.7551/978-0-262-29714-1-ch021

View Articletitled, Critical mutation rate has an exponential dependence on population size (full article)

Emergence of temporal and spatial synchronous behaviors in a foraging swarm (full article)

Sylvain Chevallier, Nicolas Bredeche, Hélène Paugam-Moisy, Michèle Sebag

isal 2011; 22https://doi.org/10.7551/978-0-262-29714-1-ch022

View Articletitled, Emergence of temporal and spatial synchronous behaviors in a foraging swarm (full article)

Degeneracy enriches artificial chemistry binding systems (full article)

Ed Clark, Adam Nellis, Simon Hickinbotham, Susan Stepney, Tim Clarke, Mungo Pay, Peter Young

isal 2011; 23https://doi.org/10.7551/978-0-262-29714-1-ch023

View Articletitled, Degeneracy enriches artificial chemistry binding systems (full article)

Evolving three-dimensional objects with a generative encoding inspired by developmental biology (full article)

Jeff Clune, Hod Lipson

isal 2011; 24https://doi.org/10.7551/978-0-262-29714-1-ch024

View Articletitled, Evolving three-dimensional objects with a generative encoding inspired by developmental biology (full article)

Selective pressures for accurate altruism targeting: evidence from digital evolution for difficult-to-test aspects of inclusive fitness theory (abstract)

Jeff Clune, Heather J. Goldsby, Charles Ofria, Robert T. Pennock

isal 2011; 25https://doi.org/10.7551/978-0-262-29714-1-ch025

View Articletitled, Selective pressures for accurate altruism targeting: evidence from digital evolution for difficult-to-test aspects of inclusive fitness theory (abstract)

Natural selection fails to optimize mutation rates for long-term adaptation on rugged fitness landscapes (abstract)

Jeff Clune, Dusan Misevic, Charles Ofria, Richard E. Lenski, Santiago F. Elena, Rafael Sanjuán

isal 2011; 26https://doi.org/10.7551/978-0-262-29714-1-ch026

View Articletitled, Natural selection fails to optimize mutation rates for long-term adaptation on rugged fitness landscapes (abstract)

Recovering hidden swarm parameters using a simulated “Robofish” (full article)

Richard Coates, Simon Hickinbotham

isal 2011; 27https://doi.org/10.7551/978-0-262-29714-1-ch027

View Articletitled, Recovering hidden swarm parameters using a simulated “Robofish” (full article)

WASPS: A weight-allocated social pressure System for the emergence of agent specialization (full article)

Denton Cockburn, Ziad Kobti

isal 2011; 28https://doi.org/10.7551/978-0-262-29714-1-ch028

View Articletitled, WASPS: A weight-allocated social pressure System for the emergence of agent specialization (full article)

How to prevent intolerant agents from high segregation? (full article)

Philippe Collard, Salma Mesmoudi

isal 2011; 29https://doi.org/10.7551/978-0-262-29714-1-ch029

View Articletitled, How to prevent intolerant agents from high segregation? (full article)

A Loop conjecture for metabolic closure (full article)

Diego A. Contreras, Ulises Pereira, Valentina C. Hernández, Bryan Reynaert, Juan- Carlos Letelier

isal 2011; 30https://doi.org/10.7551/978-0-262-29714-1-ch030

View Articletitled, A Loop conjecture for metabolic closure (full article)

From egocentric systems to systems allowing for Theory of Mind and mutualism (full article)

Holk Cruse, Malte Schilling

isal 2011; 31https://doi.org/10.7551/978-0-262-29714-1-ch031

View Articletitled, From egocentric systems to systems allowing for Theory of Mind and mutualism (full article)

Artificial gene regulatory networks and spatial computation: A case study (full article)

Sylvain Cussat-Blanc, Nicolas Bredeche, Hervé Luga, Yves Duthen, Marc Schoenauer

isal 2011; 32https://doi.org/10.7551/978-0-262-29714-1-ch032

View Articletitled, Artificial gene regulatory networks and spatial computation: A case study (full article)

Grounding synthetic knowledge: An epistemological framework and criteria of relevance for the synthetic exploration of life, affect and social cognition (full article)

Luisa Damiano, Antoine Hiolle, Lola Cañamero

isal 2011; 33https://doi.org/10.7551/978-0-262-29714-1-ch033

View Articletitled, Grounding synthetic knowledge: An epistemological framework and criteria of relevance for the synthetic exploration of life, affect and social cognition (full article)

Application of small-world mutation topologies to an Artificial Life system (abstract)

Alastair Droop, Simon Hickinbotham

isal 2011; 34https://doi.org/10.7551/978-0-262-29714-1-ch034

View Articletitled, Application of small-world mutation topologies to an Artificial Life system (abstract)

Quantifying normative behaviour and precariousness in adaptive agency (full article)

Matthew D. Egbert, Xabier E. Barandiaran

isal 2011; 35https://doi.org/10.7551/978-0-262-29714-1-ch035

View Articletitled, Quantifying normative behaviour and precariousness in adaptive agency (full article)

On the emergence of structure in behaviours evolved through embodied imitation in a group of robots (full article)

Mehmet D. Erbas, Alan F. T. Winfield

isal 2011; 36https://doi.org/10.7551/978-0-262-29714-1-ch036

View Articletitled, On the emergence of structure in behaviours evolved through embodied imitation in a group of robots (full article)

The role of energy in a stochastic model of the emergence of autocatalytic sets (full article)

Alessandro Filisetti, Alex Graudenzi, Roberto Serra, Marco Villani, Davide De Lucrezia, Irene Poli

isal 2011; 37https://doi.org/10.7551/978-0-262-29714-1-ch037

View Articletitled, The role of energy in a stochastic model of the emergence of autocatalytic sets (full article)

Distinguishing the effects of epistasis and pleiotropy using a variant of the NK model (full article)

Jonathan M. Fisher, Jason H. Moore

isal 2011; 38https://doi.org/10.7551/978-0-262-29714-1-ch038

View Articletitled, Distinguishing the effects of epistasis and pleiotropy using a variant of the NK model (full article)

A complex systems approach to education in Switzerland (full article)

Regina Frei

isal 2011; 39https://doi.org/10.7551/978-0-262-29714-1-ch039

View Articletitled, A complex systems approach to education in Switzerland (full article)

Life as a process of open-ended becoming: Analysis of a minimal model (full article)

Tom Froese, Nathaniel Virgo, Takashi Ikegami

isal 2011; 40https://doi.org/10.7551/978-0-262-29714-1-ch040

View Articletitled, Life as a process of open-ended becoming: Analysis of a minimal model (full article)

Urdar - an artificial ecology platform (abstract)

Philip Gerlee, Torbjörn Lundh

isal 2011; 41https://doi.org/10.7551/978-0-262-29714-1-ch041

View Articletitled, Urdar - an artificial ecology platform (abstract)

On computations and strategies for real and artificial systems (full article)

Amr S. Ghoneim, Daryl L. Essam, Hussein A. Abbass

isal 2011; 42https://doi.org/10.7551/978-0-262-29714-1-ch042

View Articletitled, On computations and strategies for real and artificial systems (full article)

Non-template molecules designed for open-ended evolution (full article)

Chris Gordon-Smith

isal 2011; 43https://doi.org/10.7551/978-0-262-29714-1-ch043

View Articletitled, Non-template molecules designed for open-ended evolution (full article)

Clever creatures: Case studies of evolved digital organisms (full article)

Laura M. Grabowski, David M. Bryson, Fred C. Dyer, Robert T. Pennock, Charles Ofria

isal 2011; 44https://doi.org/10.7551/978-0-262-29714-1-ch044

View Articletitled, Clever creatures: Case studies of evolved digital organisms (full article)

EcoSim: an individual-based platform for studying evolution (abstract)

Robin Gras, Abbas Golestani, Meisam Hosseini Sedehi, Marwa Khater, Yasaman Majdabadi Farahani, Morteza Mashayekhi, Sina Md Ibne, Elham Salehi, Ryan Scott

isal 2011; 45https://doi.org/10.7551/978-0-262-29714-1-ch045

View Articletitled, EcoSim: an individual-based platform for studying evolution (abstract)

Promoting meme diversity and transmission fidelity in artificial proto-cultures (full article)

Andrew Guest, Andrew Sapeluk, Alan Winfield, James Bown

isal 2011; 46https://doi.org/10.7551/978-0-262-29714-1-ch046

View Articletitled, Promoting meme diversity and transmission fidelity in artificial proto-cultures (full article)

Embodied swarming based on back propagation through time shows water- crossing, hourglass and logic-gate behaviors (full article)

Yukio-Pegio Gunji, Hisashi Murakami, Takayuki Niizato, Andrew Adamatzky, Yuta Nishiyama, Koichiro Enomoto, Masashi Toda, Toru Moriyama, Tetsuya Matsui, Kojiro Iizuka

isal 2011; 47https://doi.org/10.7551/978-0-262-29714-1-ch047

View Articletitled, Embodied swarming based on back propagation through time shows water- crossing, hourglass and logic-gate behaviors (full article)

Explaining emergent behavior in a swarm system based on an inversion of the fluctuation theorem (full article)

Heiko Hamann, Thomas Schmickl, Karl Crailsheim

isal 2011; 48https://doi.org/10.7551/978-0-262-29714-1-ch048

View Articletitled, Explaining emergent behavior in a swarm system based on an inversion of the fluctuation theorem (full article)

Global structure of directed networks emerging from a category theoretical formulation of the idea “Objects as processes, interactions as interfaces” (full article)

Taichi Haruna

isal 2011; 49https://doi.org/10.7551/978-0-262-29714-1-ch049

View Articletitled, Global structure of directed networks emerging from a category theoretical formulation of the idea “Objects as processes, interactions as interfaces” (full article)

Opening stable doors: complexity and stability in nonlinear systems (full article)

Inman Harvey

isal 2011; 50https://doi.org/10.7551/978-0-262-29714-1-ch050

View Articletitled, Opening stable doors: complexity and stability in nonlinear systems (full article)

Bondable cellular automata (full article)

Mark Hatcher, Wolfgang Banzhaf, Tina Yu

isal 2011; 51https://doi.org/10.7551/978-0-262-29714-1-ch051

View Articletitled, Bondable cellular automata (full article)

Embodied genomes and metaprogramming (full article)

Simon Hickinbotham, Susan Stepney, Adam Nellis, Tim Clarke, Ed Clark, Mungo Pay, Peter Young

isal 2011; 52https://doi.org/10.7551/978-0-262-29714-1-ch052

View Articletitled, Embodied genomes and metaprogramming (full article)

A gene regulatory network design of a synchronous single-input delay flip-flop (full article)

Imad Hoteit, Nawwaf Kharma, Luc Varin

isal 2011; 53https://doi.org/10.7551/978-0-262-29714-1-ch053

View Articletitled, A gene regulatory network design of a synchronous single-input delay flip-flop (full article)

Computational modeling of online reaching (full article)

Emmanouil Hourdakis, Panos Trahanias

isal 2011; 54https://doi.org/10.7551/978-0-262-29714-1-ch054

View Articletitled, Computational modeling of online reaching (full article)

Energy as a driver of diversity in open-ended evolution (full article)

Tim Hoverd, Susan Stepney

isal 2011; 55https://doi.org/10.7551/978-0-262-29714-1-ch055

View Articletitled, Energy as a driver of diversity in open-ended evolution (full article)

Autonomy of the internet: Complexity of flow dynamics in a packet switching network (full article)

Takashi Ikegami, Mizuki Oka, Hirotake Abe

isal 2011; 56https://doi.org/10.7551/978-0-262-29714-1-ch056

View Articletitled, Autonomy of the internet: Complexity of flow dynamics in a packet switching network (full article)

Simulation of cell-like self-replication phenomenon in a two-dimensional hybrid-cellular automata model (full article)

Takeshi Ishida

isal 2011; 57https://doi.org/10.7551/978-0-262-29714-1-ch057

View Articletitled, Simulation of cell-like self-replication phenomenon in a two-dimensional hybrid-cellular automata model (full article)

Social learning and evolution in a structured environment (full article)

Daniel Jones, Tim Blackwell

isal 2011; 58https://doi.org/10.7551/978-0-262-29714-1-ch058

View Articletitled, Social learning and evolution in a structured environment (full article)

Evolutionary dynamics of GAs in a simple model with dynamical environment and neutrality (full article)

Yoshiaki Katada

isal 2011; 59https://doi.org/10.7551/978-0-262-29714-1-ch059

View Articletitled, Evolutionary dynamics of GAs in a simple model with dynamical environment and neutrality (full article)

Why aren’t protein residue networks smaller worlds? (full article)

Susan Khor

isal 2011; 60https://doi.org/10.7551/978-0-262-29714-1-ch060

View Articletitled, Why aren’t protein residue networks smaller worlds? (full article)

A computational model of ant nest morphogenesis (full article)

Anaïs Khuong, Guy Theraulaz, Christian Jost, Andrea Perna, Jacques Gautrais

isal 2011; 61https://doi.org/10.7551/978-0-262-29714-1-ch061

View Articletitled, A computational model of ant nest morphogenesis (full article)

Ecohydrologic and biogeochemical process networks in forest ecosystems in monsoon east asia: Identification and interpretation (abstract)

Joon Kim, Juyeol Yun, Jewoo Hong, Hyojung Kwon, Junghwa Chun

isal 2011; 62https://doi.org/10.7551/978-0-262-29714-1-ch062

View Articletitled, Ecohydrologic and biogeochemical process networks in forest ecosystems in monsoon east asia: Identification and interpretation (abstract)

Parsimonious modeling of scaling laws in genomes and transcriptomes (abstract)

Carole Knibbe, David P. Parsons, Guillaume Beslon

isal 2011; 63https://doi.org/10.7551/978-0-262-29714-1-ch063

View Articletitled, Parsimonious modeling of scaling laws in genomes and transcriptomes (abstract)

Scalable co-evolution of soft robot properties and gaits (full article)

Davis Knox, John Rieffel

isal 2011; 64https://doi.org/10.7551/978-0-262-29714-1-ch064

View Articletitled, Scalable co-evolution of soft robot properties and gaits (full article)

Prediction and modularity in dynamical systems (full article)

Artemy Kolchinsky, Luis M. Rocha

isal 2011; 65https://doi.org/10.7551/978-0-262-29714-1-ch065

View Articletitled, Prediction and modularity in dynamical systems (full article)

Reaction flow artificial chemistries (full article)

Peter Kreyssig, Peter Dittrich

isal 2011; 66https://doi.org/10.7551/978-0-262-29714-1-ch066

View Articletitled, Reaction flow artificial chemistries (full article)

Artificial organelle for energy production in artificial cell (abstract)

Yutetsu Kuruma, Toshiharu Suzuki, Masasuke Yoshida, Takuya Ueda

isal 2011; 67https://doi.org/10.7551/978-0-262-29714-1-ch067

View Articletitled, Artificial organelle for energy production in artificial cell (abstract)

Genetic transposition inspired incremental genetic programming for efficient coevolution of locomotion and sensing of simulated snake-like robot (full article)

Tüze Kuyucu, Ivan Tanev, Katsunori Shimohara

isal 2011; 68https://doi.org/10.7551/978-0-262-29714-1-ch068

View Articletitled, Genetic transposition inspired incremental genetic programming for efficient coevolution of locomotion and sensing of simulated snake-like robot (full article)

Multi-Agent systems and heterogeneous scales interactions. Application to pharmacokinetics of Vitamin K antagonists (full article)

Sébastien Le Yaouanq, Pascal Redou, Christophe Le Gal, Jean-François Abgrall, Jacques Tisseau

isal 2011; 69https://doi.org/10.7551/978-0-262-29714-1-ch069

View Articletitled, Multi-Agent systems and heterogeneous scales interactions. Application to pharmacokinetics of Vitamin K antagonists (full article)

Encouraging networks modularity by Seeding Motifs

Shuguang Li, Jianping Yuan, Juan Cristóbal Zagal

isal 2011; 70https://doi.org/10.7551/978-0-262-29714-1-ch070

View Articletitled, Encouraging networks modularity by Seeding Motifs

Computational capabilities of small-world Boolean networks (abstract)

Joseph T. Lizier, Siddharth Pritam, Mikhail Prokopenko

isal 2011; 71https://doi.org/10.7551/978-0-262-29714-1-ch071

View Articletitled, Computational capabilities of small-world Boolean networks (abstract)

Controlling legged robots with coupled artificial biochemical networks (full article)

Michael A. Lones, Andy M. Tyrrell, Susan Stepney, Leo S. Caves

isal 2011; 72https://doi.org/10.7551/978-0-262-29714-1-ch072

View Articletitled, Controlling legged robots with coupled artificial biochemical networks (full article)

Cognitive conditions to the emergence of sign interpretation in artificial creatures (full article)

Angelo Loula, Ricardo Gudwin, João Queiroz

isal 2011; 73https://doi.org/10.7551/978-0-262-29714-1-ch073

View Articletitled, Cognitive conditions to the emergence of sign interpretation in artificial creatures (full article)

Evolutionary acquisition of genetic program for death (full article)

Tadao Maekawa, Osamu Ueno, Norie Kawai, Emi Nishina, Manabu Honda, Tsutomu Oohashi

isal 2011; 74https://doi.org/10.7551/978-0-262-29714-1-ch074

View Articletitled, Evolutionary acquisition of genetic program for death (full article)

Evolution of partner selection (full article)

Pedro Mariano, Luís Correia

isal 2011; 75https://doi.org/10.7551/978-0-262-29714-1-ch075

View Articletitled, Evolution of partner selection (full article)

Evolutionary attributes of simulated prebiotic metabolic networks (full article)

Omer Markovitch, Doron Lancet

isal 2011; 76https://doi.org/10.7551/978-0-262-29714-1-ch076

View Articletitled, Evolutionary attributes of simulated prebiotic metabolic networks (full article)

Polyethism in a colony of artificial ants (full article)

Chris Marriott, Carlos Gershenson

isal 2011; 77https://doi.org/10.7551/978-0-262-29714-1-ch077

View Articletitled, Polyethism in a colony of artificial ants (full article)

Tipping the scales: guidance and intrinsically motivated behavior (full article)

Georg Martius, J. Michael Herrmann

isal 2011; 78https://doi.org/10.7551/978-0-262-29714-1-ch078

View Articletitled, Tipping the scales: guidance and intrinsically motivated behavior (full article)

Robotic approach to understand the role of vicarious trial-and-error in a T-maze task (full article)

Eiko Matsuda, Julien Hubert, Takashi Ikegami

isal 2011; 79https://doi.org/10.7551/978-0-262-29714-1-ch079

View Articletitled, Robotic approach to understand the role of vicarious trial-and-error in a T-maze task (full article)

Devil in the details: Analysis of a coevolutionary model of language evolution via relaxation of selection (full article)

Luke McCrohon, Olaf Witkowski

isal 2011; 80https://doi.org/10.7551/978-0-262-29714-1-ch080

View Articletitled, Devil in the details: Analysis of a coevolutionary model of language evolution via relaxation of selection (full article)

Evolution of self-Maintaining cellular Information processing networks (abstract)

Barry McMullin, James Decraene

isal 2011; 81https://doi.org/10.7551/978-0-262-29714-1-ch081

View Articletitled, Evolution of self-Maintaining cellular Information processing networks (abstract)

Digital sex: Causes and consequences(abstract)

Dusan Misevic, Charles Ofria, Richard E. Lenski

isal 2011; 82https://doi.org/10.7551/978-0-262-29714-1-ch082

View Articletitled, Digital sex: Causes and consequences(abstract)

Modeling cell division of B. Subtilis using dynamic division of reaction spaces in a membrane artificial chemistry (full article)

Takuma Miyake, Kazuto Tominaga

isal 2011; 83https://doi.org/10.7551/978-0-262-29714-1-ch083

View Articletitled, Modeling cell division of B. Subtilis using dynamic division of reaction spaces in a membrane artificial chemistry (full article)

A cultural evolutionary model for artifact capabilities (full article)

Felicitas Mokom, Ziad Kobti

isal 2011; 84https://doi.org/10.7551/978-0-262-29714-1-ch084

View Articletitled, A cultural evolutionary model for artifact capabilities (full article)

Surviving the tragedy of commons: Emergence of altruism in a population of evolving autonomous agents

Jean-Marc Montanier, Nicolas Bredeche

isal 2011; 85https://doi.org/10.7551/978-0-262-29714-1-ch085

View Articletitled, Surviving the tragedy of commons: Emergence of altruism in a population of evolving autonomous agents

Learning symbolic forward models for robotic motion planning and control (full article)

Hirotaka Moriguchi, Hod Lipson

isal 2011; 86https://doi.org/10.7551/978-0-262-29714-1-ch086

View Articletitled, Learning symbolic forward models for robotic motion planning and control (full article)

Identifying species by genetic clustering (full article)

Jaimie Murdock, Larry S. Yaeger

isal 2011; 87https://doi.org/10.7551/978-0-262-29714-1-ch087

View Articletitled, Identifying species by genetic clustering (full article)

Embodied reaction logic in a simulated chemical computer (full article)

Fintan Nagle, Simon Hickinbotham

isal 2011; 88https://doi.org/10.7551/978-0-262-29714-1-ch088

View Articletitled, Embodied reaction logic in a simulated chemical computer (full article)

Virtual fluid environment on behavior ability for artificial creature (full article)

Keita Nakamura, Ikuo Suzuki, Masahito Yamamoto, Masashi Furukawa

isal 2011; 89https://doi.org/10.7551/978-0-262-29714-1-ch089

View Articletitled, Virtual fluid environment on behavior ability for artificial creature (full article)

Autonomous learning in an information stream through autopoiesis (full article)

Nikolaos Nanas

isal 2011; 90https://doi.org/10.7551/978-0-262-29714-1-ch090

View Articletitled, Autonomous learning in an information stream through autopoiesis (full article)

Embodied copying for richer evolution (full article)

Adam Nellis, Susan Stepney

isal 2011; 91https://doi.org/10.7551/978-0-262-29714-1-ch091

View Articletitled, Embodied copying for richer evolution (full article)

An Experiment in mixing evolving and preprogrammed robots (full article)

Sancho Oliveira, Luis Nunes, Anders Lyhne Christensen

isal 2011; 92https://doi.org/10.7551/978-0-262-29714-1-ch092

View Articletitled, An Experiment in mixing evolving and preprogrammed robots (full article)

Evolutionary dynamics of collective action (abstract)

Jorge M. Pacheco, Francisco C. Santos, Max O. Souza, Brian Skyrms

isal 2011; 93https://doi.org/10.7551/978-0-262-29714-1-ch093

View Articletitled, Evolutionary dynamics of collective action (abstract)

The influence of whole genome duplication and subsequent diversification on environmental robustness and evolutionary innovation in gene regulatory networks (full article)

Qinxin Pan, Christian Darabos, Anna L. Tyler, Jason H. Moore, Joshua L. Payne

isal 2011; 94https://doi.org/10.7551/978-0-262-29714-1-ch094

View Articletitled, The influence of whole genome duplication and subsequent diversification on environmental robustness and evolutionary innovation in gene regulatory networks (full article)

Homologous and nonhomologous rearrangements: Interactions and effects on evolvability (full article)

David P. Parsons, Carole Knibbe, Guillaume Beslon

isal 2011; 95https://doi.org/10.7551/978-0-262-29714-1-ch095

View Articletitled, Homologous and nonhomologous rearrangements: Interactions and effects on evolvability (full article)

A checkpoint-orientated model to simulate unconstrained proliferation of cells (full article)

Jonathan Pascalie, Valérie Lobjois, Hervé Luga, Bernard Ducommun, Yves Duthen

isal 2011; 96https://doi.org/10.7551/978-0-262-29714-1-ch096

View Articletitled, A checkpoint-orientated model to simulate unconstrained proliferation of cells (full article)

Robustness, evolvability, and accessibility in the signal- integration space of gene regulatory circuits (full article)

Joshua L. Payne, Jason Moore

isal 2011; 97https://doi.org/10.7551/978-0-262-29714-1-ch097

View Articletitled, Robustness, evolvability, and accessibility in the signal- integration space of gene regulatory circuits (full article)

Formalizing institutions as executable petri nets for distributed robotic systems (full article)

José N. Pereira, Porfírio Silva, Pedro U. Lima, Alcherio Martinoli

isal 2011; 98https://doi.org/10.7551/978-0-262-29714-1-ch098

View Articletitled, Formalizing institutions as executable petri nets for distributed robotic systems (full article)

Coordination games on small- worlds: Artificial agents vs. experiments (full article)

Enea Pestelacci, Marco Tomassini, Alberto Antonioni

isal 2011; 99https://doi.org/10.7551/978-0-262-29714-1-ch099

View Articletitled, Coordination games on small- worlds: Artificial agents vs. experiments (full article)

A DNA toolbox for engineering in vitro life-like behaviors (abstract)

Raphaël Plasson, Kevin Montagne, Adrien Padirac, Teruo Fujii, Yannick Rondelez

isal 2011; 100https://doi.org/10.7551/978-0-262-29714-1-ch100

View Articletitled, A DNA toolbox for engineering in vitro life-like behaviors (abstract)

Programs self-healing over a termites simulator based on language games and evolutionary computing (full article)

Arles Rodríguez Portela, Jonatan Gómez Perdomo

isal 2011; 101https://doi.org/10.7551/978-0-262-29714-1-ch101

View Articletitled, Programs self-healing over a termites simulator based on language games and evolutionary computing (full article)

How to measure group selection in real-world populations (full article)

Simon T. Powers, Christopher Heys, Richard A. Watson

isal 2011; 102https://doi.org/10.7551/978-0-262-29714-1-ch102

View Articletitled, How to measure group selection in real-world populations (full article)

Using statistical inference for designing termination conditions ensuring convergence of Evolutionary Algorithms (full article)

David Roche, Debora Gil, Jesus Giraldo

isal 2011; 103https://doi.org/10.7551/978-0-262-29714-1-ch103

View Articletitled, Using statistical inference for designing termination conditions ensuring convergence of Evolutionary Algorithms (full article)

Local information maximisation creates emergent flocking behavior (full article)

Christoph Salge, Daniel Polani

isal 2011; 104https://doi.org/10.7551/978-0-262-29714-1-ch104

View Articletitled, Local information maximisation creates emergent flocking behavior (full article)

An innovative bio- inspired fault tolerant unitronics architecture (full article)

Mohammad Samie, Gabriel Dragffy, Tony Pipe, Paul Bremner

isal 2011; 105https://doi.org/10.7551/978-0-262-29714-1-ch105

View Articletitled, An innovative bio- inspired fault tolerant unitronics architecture (full article)

A biomimetic robot controller based o minimizing the unpredictability of the environment: allostatic control revised (full article)

Martí Sánchez-Fibla, Armin Duff, Ulysses Bernardet, Paul F.M.J. Verschure

isal 2011; 106https://doi.org/10.7551/978-0-262-29714-1-ch106

View Articletitled, A biomimetic robot controller based o minimizing the unpredictability of the environment: allostatic control revised (full article)

Swarms for robot vision: The case of adaptive visual trail detection and tracking (full article)

Pedro Santana, Ricardo Mendonça, Luís Correia, José Barata

isal 2011; 107https://doi.org/10.7551/978-0-262-29714-1-ch107

View Articletitled, Swarms for robot vision: The case of adaptive visual trail detection and tracking (full article)

Co-evolution of pre-play signaling and cooperation (abstract)

Francisco C. Santos, Jorge M. Pacheco, Brian Skyrms

isal 2011; 108https://doi.org/10.7551/978-0-262-29714-1-ch108

View Articletitled, Co-evolution of pre-play signaling and cooperation (abstract)

An experimental and computational approach to the dynamic body boundary problem (full article)

Yuki Sato, Hiroyuki Iizuka, Takashi Ikegami

isal 2011; 109https://doi.org/10.7551/978-0-262-29714-1-ch109

View Articletitled, An experimental and computational approach to the dynamic body boundary problem (full article)

Quantifying evolutionary dynamics of swarm chemistry (full article)

Hiroki Sayama, Chun Wong

isal 2011; 110https://doi.org/10.7551/978-0-262-29714-1-ch110

View Articletitled, Quantifying evolutionary dynamics of swarm chemistry (full article)

Learning by seeing -- associative learning of visual features through mental simulation of observed action (full article)

Malte Schilling

isal 2011; 111https://doi.org/10.7551/978-0-262-29714-1-ch111

View Articletitled, Learning by seeing -- associative learning of visual features through mental simulation of observed action (full article)

An animat's cell doctrine (full article)

Lisa Schramm, Bernhard Sendhoff

isal 2011; 112https://doi.org/10.7551/978-0-262-29714-1-ch112

View Articletitled, An animat's cell doctrine (full article)

Feeding the beast: Can computational demographic models free us from the tyranny of data? (full article)

Eric Silverman, Jakub Bijak, Jason Noble

isal 2011; 113https://doi.org/10.7551/978-0-262-29714-1-ch113

View Articletitled, Feeding the beast: Can computational demographic models free us from the tyranny of data? (full article)

A schematic representation of autopoiesis using a new kind of discrete spatial automaton (full article)

Jean Sirmai

isal 2011; 114https://doi.org/10.7551/978-0-262-29714-1-ch114

View Articletitled, A schematic representation of autopoiesis using a new kind of discrete spatial automaton (full article)

Ouroboros avatars: A mathematical exploration of self- reference and metabolic closure (full article)

Jorge Soto-Andrade, Sebastián Jaramillo, Claudio Gutiérrez, Juan-Carlos Letelier

isal 2011; 115https://doi.org/10.7551/978-0-262-29714-1-ch115

View Articletitled, Ouroboros avatars: A mathematical exploration of self- reference and metabolic closure (full article)

Recruitment, selection and alignment of spatial language strategies (full article)

Michael Spranger

isal 2011; 116https://doi.org/10.7551/978-0-262-29714-1-ch116

View Articletitled, Recruitment, selection and alignment of spatial language strategies (full article)

An update on the minimal cell project: From the physics of solute encapsulation to the experimental modeling of cell communities (abstract)

Pasquale Stano, Paolo Carrara, Tereza Pereira de Souza, Pier Luigi Luisi

isal 2011; 117https://doi.org/10.7551/978-0-262-29714-1-ch117

View Articletitled, An update on the minimal cell project: From the physics of solute encapsulation to the experimental modeling of cell communities (abstract)

Reflecting on open-ended evolution (full article)

Susan Stepney, Tim Hoverd

isal 2011; 118https://doi.org/10.7551/978-0-262-29714-1-ch118

View Articletitled, Reflecting on open-ended evolution (full article)

Self-organized flocking with an heterogeneous mobile robot swarm (full article)

Alessandro Stranieri, Eliseo Ferrante, Ali E. Turgut, Vito Trianni, Carlo Pinciroli, Mauro Birattari, Marco Dorigo

isal 2011; 119https://doi.org/10.7551/978-0-262-29714-1-ch119

View Articletitled, Self-organized flocking with an heterogeneous mobile robot swarm (full article)

An improved transfer entropy method for establishing causal effects in synchronizing oscillators (full article)

James Thorniley

isal 2011; 120https://doi.org/10.7551/978-0-262-29714-1-ch120

View Articletitled, An improved transfer entropy method for establishing causal effects in synchronizing oscillators (full article)

Many hands make light work: Group evolution and the emergent division of labour (full article)

Nicholas Tomko, Inman Harvey, Andrew Philippides, Nathaniel Virgo

isal 2011; 121https://doi.org/10.7551/978-0-262-29714-1-ch121

View Articletitled, Many hands make light work: Group evolution and the emergent division of labour (full article)

An interactive wall game as an evolution of proto language (full article)

Ryoko Uno, Keisuke Suzuki, Takashi Ikegami

isal 2011; 122https://doi.org/10.7551/978-0-262-29714-1-ch122

View Articletitled, An interactive wall game as an evolution of proto language (full article)

A decomposition theorem in chemical organizations (full article)

Tomas Veloz, Bryan Reynaert, David Rojas-Camaggi, Peter Dittrich

isal 2011; 123https://doi.org/10.7551/978-0-262-29714-1-ch123

View Articletitled, A decomposition theorem in chemical organizations (full article)

The elongation catastrophe in physical self-replicators (full article)

Nathaniel Virgo, Chrisantha Fernando, Bill Bigge, Phil Husbands

isal 2011; 124https://doi.org/10.7551/978-0-262-29714-1-ch124

View Articletitled, The elongation catastrophe in physical self-replicators (full article)

Clustering behavior of a bio-inspired decentralized aggregation scheme (abstract)

Nikolaos Vlassopoulos, Nazim Fatès

isal 2011; 125https://doi.org/10.7551/978-0-262-29714-1-ch125

View Articletitled, Clustering behavior of a bio-inspired decentralized aggregation scheme (abstract)

Measuring information storage and transfer in swarms (full article)

X. Rosalind Wang, Jennifer M. Miller, Joseph T. Lizier, Mikhail Prokopenko, Louis F. Rossi

isal 2011; 126https://doi.org/10.7551/978-0-262-29714-1-ch126

View Articletitled, Measuring information storage and transfer in swarms (full article)

An agent-based model of jaguar movement through conservation corridors (full article)

Angela Watkins, Jason Noble, C. Patrick Doncaster

isal 2011; 127https://doi.org/10.7551/978-0-262-29714-1-ch127

View Articletitled, An agent-based model of jaguar movement through conservation corridors (full article)

Transformations and multi- scale optimisation in biological adaptive networks (abstract)

Richard A. Watson, Rob Mills, Christopher L. Buckley

isal 2011; 128https://doi.org/10.7551/978-0-262-29714-1-ch128

View Articletitled, Transformations and multi- scale optimisation in biological adaptive networks (abstract)

Spatial structure creates community-level selection for nutrient recycling (abstract)

Hywel T.P. Williams, Richard A. Boyle, Tim M. Lenton

isal 2011; 129https://doi.org/10.7551/978-0-262-29714-1-ch129

View Articletitled, Spatial structure creates community-level selection for nutrient recycling (abstract)

Artificial cells as reified quines (full article)

Lance R. Williams

isal 2011; 130https://doi.org/10.7551/978-0-262-29714-1-ch130

View Articletitled, Artificial cells as reified quines (full article)

Life requires genetic representation an vice versa – Consequences for ALife (full article)

Peter R. Wills

isal 2011; 131https://doi.org/10.7551/978-0-262-29714-1-ch131

View Articletitled, Life requires genetic representation an vice versa – Consequences for ALife (full article)

Evolutionary transition through a new multilevel selection model (full article)

Shelly Xiaonan Wu, Wolfgang Banzhaf

isal 2011; 132https://doi.org/10.7551/978-0-262-29714-1-ch132

View Articletitled, Evolutionary transition through a new multilevel selection model (full article)

Behavioral acquisition of complicated locomotion for artificial elastic robot using decentralized behavior composed (full article)

Keisuke Yoneda, Ikuo Suzuki, Masahito Yamamoto, Masashi Furukawa

isal 2011; 133https://doi.org/10.7551/978-0-262-29714-1-ch133

View Articletitled, Behavioral acquisition of complicated locomotion for artificial elastic robot using decentralized behavior composed (full article)

Evolving robot gaits in hardware: the HyperNEAT generative encoding vs. parameter optimization (full article)

Jason Yosinski, Jeff Clune, Diana Hidalgo, Sarah Nguyen, Juan Cristobal Zagal, Hod Lipson

isal 2011; 134https://doi.org/10.7551/978-0-262-29714-1-ch134

View Articletitled, Evolving robot gaits in hardware: the HyperNEAT generative encoding vs. parameter optimization (full article)

Landmark vector model with quantized distance for homing navigation (abstract)

Seung-Eun Y, DaeEun Kim

isal 2011; 135https://doi.org/10.7551/978-0-262-29714-1-ch135

View Articletitled, Landmark vector model with quantized distance for homing navigation (abstract)

On the interaction of adaptive timescales on networks (full article)

Elisabeth Zu Erbach-Schoenberg, Connor McCabe, Seth Bullock

isal 2011; 136https://doi.org/10.7551/978-0-262-29714-1-ch136

View Articletitled, On the interaction of adaptive timescales on networks (full article)