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Austin J. Ferguson
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Proceedings Papers
. isal, ALIFE 2022: The 2022 Conference on Artificial Life52, (July 18–22, 2022) doi: 10.1162/isal_a_00536
Abstract
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The major evolutionary transition to multicellularity shifted the unit of selection from individual cells to multicellular organisms. Constituent cells must regulate their growth and cooperate to benefit the whole organism, even when such behaviors would have been maladaptive were they free living. Mutations that disrupt cellular cooperation can lead to various ailments, including physical deformities and cancer. Organisms therefore employ mechanisms to enforce cooperation, such as error correction, policing, and genetic robustness. We built a simulation to study this last mechanism under a range of evolutionary conditions. Specifically, we asked: How does genetic robustness against cellular cheating evolve in multicellular organisms? We focused on early multicellular organisms (with only one cell type) where cells must control their growth to avoid overwriting each other. In our model, unrestrained cells will outcompete restrained cells within an organism, but restrained cells alone will result in faster reproduction for the organism. Ultimately, we demonstrate a clear selective pressure for genetic robustness in multicellular organisms and show that this pressure increases with the total number of cells in the organism.
Proceedings Papers
. isal, ALIFE 2022: The 2022 Conference on Artificial Life21, (July 18–22, 2022) doi: 10.1162/isal_a_00499
Proceedings Papers
. isal2020, ALIFE 2020: The 2020 Conference on Artificial Life160-162, (July 13–18, 2020) doi: 10.1162/isal_a_00325
Proceedings Papers
. isal2019, ALIFE 2019: The 2019 Conference on Artificial Life507-514, (July 29–August 2, 2019) doi: 10.1162/isal_a_00213
Abstract
PDF
As the field of Artificial Life advances and grows, we find ourselves in the midst of an increasingly complex ecosystem of software systems. Each system is developed to address particular research objectives, all unified under the common goal of understanding life. Such an ambitious endeavor begets a variety of algorithmic challenges. Many projects have solved some of these problems for individual systems, but these solutions are rarely portable and often must be re-engineered across systems. Here, we propose a community-driven process of developing standards for representing commonly used types of data across our field. These standards will improve software re-use across research groups and allow for easier comparisons of results generated with different artificial life systems. We began the process of developing data standards with two discussion-driven workshops (one at the 2018 Conference for Artificial Life and the other at the 2018 Congress for the BEACON Center for the Study of Evolution in Action). At each of these workshops, we discussed the vision for Artificial Life data standards, proposed and refined a standard for phylogeny (ancestry tree) data, and solicited feedback from attendees. In addition to proposing a general vision and framework for Artificial Life data standards, we release and discuss version 1.0.0 of the standards. This release includes the phylogeny data standard developed at these workshops and several software resources under development to support our proposed phylogeny standards framework.