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Eric Shea-Brown
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Journal Articles
Heterogeneity in Neuronal Dynamics Is Learned by Gradient Descent for Temporal Processing Tasks
FreePublisher: Journals Gateway
Neural Computation (2023) 35 (4): 555–592.
Published: 18 March 2023
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Abstract
View articletitled, Heterogeneity in Neuronal Dynamics Is Learned by Gradient Descent for Temporal Processing Tasks
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for article titled, Heterogeneity in Neuronal Dynamics Is Learned by Gradient Descent for Temporal Processing Tasks
Individual neurons in the brain have complex intrinsic dynamics that are highly diverse. We hypothesize that the complex dynamics produced by networks of complex and heterogeneous neurons may contribute to the brain's ability to process and respond to temporally complex data. To study the role of complex and heterogeneous neuronal dynamics in network computation, we develop a rate-based neuronal model, the generalized-leaky-integrate-and-fire-rate (GLIFR) model, which is a rate equivalent of the generalized-leaky-integrate-and-fire model. The GLIFR model has multiple dynamical mechanisms, which add to the complexity of its activity while maintaining differentiability. We focus on the role of after-spike currents, currents induced or modulated by neuronal spikes, in producing rich temporal dynamics. We use machine learning techniques to learn both synaptic weights and parameters underlying intrinsic dynamics to solve temporal tasks. The GLIFR model allows the use of standard gradient descent techniques rather than surrogate gradient descent, which has been used in spiking neural networks. After establishing the ability to optimize parameters using gradient descent in single neurons, we ask how networks of GLIFR neurons learn and perform on temporally challenging tasks, such as sequential MNIST. We find that these networks learn diverse parameters, which gives rise to diversity in neuronal dynamics, as demonstrated by clustering of neuronal parameters. GLIFR networks have mixed performance when compared to vanilla recurrent neural networks, with higher performance in pixel-by-pixel MNIST but lower in line-by-line MNIST. However, they appear to be more robust to random silencing. We find that the ability to learn heterogeneity and the presence of after-spike currents contribute to these gains in performance. Our work demonstrates both the computational robustness of neuronal complexity and diversity in networks and a feasible method of training such models using exact gradients.
Journal Articles
Publisher: Journals Gateway
Neural Computation (2022) 34 (3): 541–594.
Published: 17 February 2022
Abstract
View articletitled, Single Circuit in V1 Capable of Switching Contexts During Movement Using an Inhibitory Population as a Switch
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for article titled, Single Circuit in V1 Capable of Switching Contexts During Movement Using an Inhibitory Population as a Switch
As animals adapt to their environments, their brains are tasked with processing stimuli in different sensory contexts. Whether these computations are context dependent or independent, they are all implemented in the same neural tissue. A crucial question is what neural architectures can respond flexibly to a range of stimulus conditions and switch between them. This is a particular case of flexible architecture that permits multiple related computations within a single circuit. Here, we address this question in the specific case of the visual system circuitry, focusing on context integration, defined as the integration of feedforward and surround information across visual space. We show that a biologically inspired microcircuit with multiple inhibitory cell types can switch between visual processing of the static context and the moving context. In our model, the VIP population acts as the switch and modulates the visual circuit through a disinhibitory motif. Moreover, the VIP population is efficient, requiring only a relatively small number of neurons to switch contexts. This circuit eliminates noise in videos by using appropriate lateral connections for contextual spatiotemporal surround modulation, having superior denoising performance compared to circuits where only one context is learned. Our findings shed light on a minimally complex architecture that is capable of switching between two naturalistic contexts using few switching units.
Includes: Supplementary data
Journal Articles
Publisher: Journals Gateway
Neural Computation (2018) 30 (5): 1209–1257.
Published: 01 May 2018
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View articletitled, Predictive Coding in Area V4: Dynamic Shape Discrimination under Partial Occlusion
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for article titled, Predictive Coding in Area V4: Dynamic Shape Discrimination under Partial Occlusion
The primate visual system has an exquisite ability to discriminate partially occluded shapes. Recent electrophysiological recordings suggest that response dynamics in intermediate visual cortical area V4, shaped by feedback from prefrontal cortex (PFC), may play a key role. To probe the algorithms that may underlie these findings, we build and test a model of V4 and PFC interactions based on a hierarchical predictive coding framework. We propose that probabilistic inference occurs in two steps. Initially, V4 responses are driven solely by bottom-up sensory input and are thus strongly influenced by the level of occlusion. After a delay, V4 responses combine both feedforward input and feedback signals from the PFC; the latter reflect predictions made by PFC about the visual stimulus underlying V4 activity. We find that this model captures key features of V4 and PFC dynamics observed in experiments. Specifically, PFC responses are strongest for occluded stimuli and delayed responses in V4 are less sensitive to occlusion, supporting our hypothesis that the feedback signals from PFC underlie robust discrimination of occluded shapes. Thus, our study proposes that area V4 and PFC participate in hierarchical inference, with feedback signals encoding top-down predictions about occluded shapes.
Journal Articles
Publisher: Journals Gateway
Neural Computation (2013) 25 (7): 1768–1806.
Published: 01 July 2013
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View articletitled, Neutral Stability, Rate Propagation, and Critical Branching in Feedforward Networks
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for article titled, Neutral Stability, Rate Propagation, and Critical Branching in Feedforward Networks
Recent experimental and computational evidence suggests that several dynamical properties may characterize the operating point of functioning neural networks: critical branching, neutral stability, and production of a wide range of firing patterns. We seek the simplest setting in which these properties emerge, clarifying their origin and relationship in random, feedforward networks of McCullochs-Pitts neurons. Two key parameters are the thresholds at which neurons fire spikes and the overall level of feedforward connectivity. When neurons have low thresholds, we show that there is always a connectivity for which the properties in question all occur, that is, these networks preserve overall firing rates from layer to layer and produce broad distributions of activity in each layer. This fails to occur, however, when neurons have high thresholds. A key tool in explaining this difference is the eigenstructure of the resulting mean-field Markov chain, as this reveals which activity modes will be preserved from layer to layer. We extend our analysis from purely excitatory networks to more complex models that include inhibition and local noise, and find that both of these features extend the parameter ranges over which networks produce the properties of interest.
Journal Articles
Publisher: Journals Gateway
Neural Computation (2013) 25 (2): 289–327.
Published: 01 February 2013
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View articletitled, Impact of Correlated Neural Activity on Decision-Making Performance
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for article titled, Impact of Correlated Neural Activity on Decision-Making Performance
Stimulus from the environment that guides behavior and informs decisions is encoded in the firing rates of neural populations. Neurons in the populations, however, do not spike independently: spike events are correlated from cell to cell. To what degree does this apparent redundancy have an impact on the accuracy with which decisions can be made and the computations required to optimally decide? We explore these questions for two illustrative models of correlation among cells. Each model is statistically identical at the level of pairwise correlations but differs in higher-order statistics that describe the simultaneous activity of larger cell groups. We find that the presence of correlations can diminish the performance attained by an ideal decision maker to either a small or large extent, depending on the nature of the higher-order correlations. Moreover, although this optimal performance can in some cases be obtained using the standard integration-to-bound operation, in others it requires a nonlinear computation on incoming spikes. Overall, we conclude that a given level of pairwise correlations, even when restricted to identical neural populations, may not always indicate redundancies that diminish decision-making performance.
Journal Articles
Publisher: Journals Gateway
Neural Computation (2009) 21 (10): 2774–2804.
Published: 01 October 2009
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View articletitled, Stimulus-Dependent Correlations and Population Codes
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for article titled, Stimulus-Dependent Correlations and Population Codes
The magnitude of correlations between stimulus-driven responses of pairs of neurons can itself be stimulus dependent. We examine how this dependence affects the information carried by neural populations about the stimuli that drive them. Stimulus-dependent changes in correlations can both carry information directly and modulate the information separately carried by the firing rates and variances. We use Fisher information to quantify these effects and show that, although stimulus-dependent correlations often carry little information directly, their modulatory effects on the overall information can be large. In particular, if the stimulus dependence is such that correlations increase with stimulus-induced firing rates, this can significantly enhance the information of the population when the structure of correlations is determined solely by the stimulus. However, in the presence of additional strong spatial decay of correlations, such stimulus dependence may have a negative impact. Opposite relationships hold when correlations decrease with firing rates.
Journal Articles
Publisher: Journals Gateway
Neural Computation (2008) 20 (12): 2863–2894.
Published: 01 December 2008
Abstract
View articletitled, Optimization of Decision Making in Multilayer Networks: The Role of Locus Coeruleus
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for article titled, Optimization of Decision Making in Multilayer Networks: The Role of Locus Coeruleus
Previous theoretical work has shown that a single-layer neural network can implement the optimal decision process for simple, two-alternative forced-choice (2AFC) tasks. However, it is likely that the mammalian brain comprises multilayer networks, raising the question of whether and how optimal performance can be approximated in such an architecture. Here, we present theoretical work suggesting that the noradrenergic nucleus locus coeruleus (LC) may help optimize 2AFC decision making in the brain. This is based on the observations that neurons of the LC selectively fire following the presentation of salient stimuli in decision tasks and that the corresponding release of norepinephrine can transiently increase the responsivity, or gain, of cortical processing units. We describe computational simulations that investigate the role of such gain changes in optimizing performance of 2AFC decision making. In the tasks we model, no prior cueing or knowledge of stimulus onset time is assumed. Performance is assessed in terms of the rate of correct responses over time (the reward rate). We first present the results of a single-layer model that accumulates (integrates) sensory input and implements the decision process as a threshold crossing. Gain transients, representing the modulatory effect of the LC, are driven by separate threshold crossings in this layer. We optimize over all free parameters to determine the maximum reward rate achievable by this model and compare it to the maximum reward rate when gain is held fixed. We find that the dynamic gain mechanism yields no improvement in reward for this single-layer model. We then examine a two-layer model, in which competing sensory accumulators in the first layer (capable of implementing the task relevant decision) pass activity to response accumulators in a second layer. Again, we compare a version in which threshold crossing in the first (decision) layer elicits an LC response (and a concomitant increase in gain) with a fixed-gain version of the model. Here, we find that gain transients modeling the LC phasic response yield an improvement in reward rate of 12% to 24%. Furthermore, we show that the timing characteristics of these gain transients agree with observations concerning LC firing patterns reported in recent experimental studies. This provides converging evidence for the hypothesis that the LC optimizes processes underlying 2AFC decision making in multilayer networks.