The standard deviation of the noise, σ, can be computed as the sample standard deviation of a portion of the data in which there were no calcium transients. The parameters that determine the speed of the rise and decay of the pulse, α and γ, are predominantly defined by characteristics of the fluorescent indicator that was used to generate the imaging data. In Table 1, we provide documented values of α and γ for four commonly used fluorescent indicators, extracted from the corresponding references: Cal-520 AM (Tada et al., 2014), OGB-1 AM (Lütcke, Gerhard, Zenke, Gerstner, & Helmchen, 2013), and GCaMP6f and GCaMP6s (Chen et al., 2013). These values can be used as a guideline; in practice, they will vary with the indicator expression level, as well as the cell type. We note that the time taken for a calcium transient to rise to its peak and the decay time are functions of both α and γ; the values presented in Table 1 are thus not easily interpretable in terms of the shape of a calcium transient pulse.

Table 1:
Calcium Indicator Rise and Decay Parameters.
Fluorescent Indicatorα(s-1)γ(s-1)
GCaMP6f 4.88 60.97 
GCaMP6s 1.26 15.16 
OGB-1 AM 1.5 101.5 
Cal-520 AM 3.18 34.39 
Fluorescent Indicatorα(s-1)γ(s-1)
GCaMP6f 4.88 60.97 
GCaMP6s 1.26 15.16 
OGB-1 AM 1.5 101.5 
Cal-520 AM 3.18 34.39 

Notes: To calculate CosMIC's pulse width, the parameters that define the speed of rise and decay of the calcium transient, α and γ, are required. Here, we provide documented values of these parameters for four commonly used fluorescent indicators.

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